ScPCA Portal
Single-cell Pediatric Cancer Atlas Portal

Growing database of uniformly processed single-cell data from pediatric cancer tumors and model systems.

ScPCA Portal currently has
Projects
Cancer Types
Total Samples
Labs
Explore the available cancer types.
Childhood Cancer Data Lab powered by ALSF Logo

Alex’s Lemonade Stand Foundation (ALSF) funded 10 childhood cancer investigators from 8 different institutions working on single-cell profiling to create a publicly available atlas of single-cell pediatric cancer data.

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How is the data processed?

All of the data is uniformly processed with an open source and freely available pipeline which uses alevin-fry, and Bioconductor packages.

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What am I downloading?

When you download from the ScPCA Portal, you will receive both filtered and unfiltered count matrices for each sample along with sample and project metadata.

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Alex’s Lemonade Stand Foundation for Childhood Cancer333 E. Lancaster Ave, #414, Wynnewood, PA 19096 USAPhone: 866.333.1213 • Fax: 610.649.3038Email: scpca@ccdatalab.org
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Alex's Lemonade Stand Foundation Logo

Developed By

Childhood Cancer Data Lab powered by ALSF Logo